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Rescue Media Builder only looks at drivers for certain device classes, namely storage, network, and USB host controllers. But even if you manually add drivers to your Rescue Media, I don’t know if the WinPE/RE kernel has the necessary OS-level support for Thunderbolt. For example, WinPE/RE doesn’t support Bluetooth, even if you supply drivers for a Bluetooth adapter.
The Thunderbolt controller in Device Manager appears under System Devices, although on some systems it only appears when an actual Thunderbolt peripheral is connected.